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| 2006-04-30 09:44:06 | Louisville Colonels | Eddie Pickett | Add/Drop | | |
| 2006-04-30 08:27:00 | Miami Macho Men | Ervin Gadlage | Add/Drop | Steven Witten | |
| 2006-04-30 06:14:30 | Minneapolis Bricklayers | | Drop | Morty Tackett | |
| 2006-04-30 05:49:38 | Minneapolis Bricklayers | | Drop | Kordell Kern | |
| 2006-04-30 05:08:44 | Minneapolis Bricklayers | | Drop | Norm Owsley | |
| 2006-04-30 04:55:04 | Minneapolis Bricklayers | | Drop | Johnnie Riggins | |
| 2006-04-30 04:45:30 | Minneapolis Bricklayers | | Drop | Horton Hammer | |
| 2006-04-30 00:08:04 | Miami Macho Men | | Drop | William Vanderpool | |
| 2006-04-29 21:34:38 | Houston Octopods | | Drop | Elden Kaplan | |
| 2006-04-29 19:50:00 | Sacramento Rainbow Trout | Zack Peak | Acquired via waivers | | Waiver |
| 2006-04-29 19:50:00 | Atlanta Eels | Frank Hardin | Acquired via waivers | | Waiver |
| 2006-04-29 19:50:00 | Charlotte Rangers | Antony Berka | Acquired via waivers | | Waiver |
| 2006-04-29 19:50:00 | San Francisco Golden Gators | Rafael Baxter | Acquired via waivers | | Waiver |
| 2006-04-29 19:50:00 | Miami Macho Men | Shea Logsdon | Acquired via waivers | | Waiver |
| 2006-04-29 19:40:00 | Milwaukee Sundancers | Jaycee Kohn | Acquired via trade | 1st round pick in season 14 | Philadelphia Assassins |
| 2006-04-29 19:30:00 | Milwaukee Sundancers | Linus Wooldridge | Acquired via trade | Kareem Kendrick | San Antonio Brothas |
| 2006-04-29 19:30:00 | Milwaukee Sundancers | Nelson Kiefer | Acquired via trade | Daunte Stanton | San Antonio Brothas |
| 2006-04-29 19:30:00 | Milwaukee Sundancers | Fernando England | Acquired via trade | | San Antonio Brothas |
| 2006-04-29 19:20:00 | Minneapolis Bricklayers | Gabby Kuntz | Acquired via trade | Scott Garrick | San Francisco Golden Gators |
| 2006-04-29 19:20:00 | Minneapolis Bricklayers | Tandre Dougherty | Acquired via trade | 1st round pick in season 15 | San Francisco Golden Gators |
| 2006-04-29 19:20:00 | Minneapolis Bricklayers | Simon Rucker | Acquired via trade | | San Francisco Golden Gators |
| 2006-04-29 19:20:00 | Minneapolis Bricklayers | Raymond Burgess | Acquired via trade | | San Francisco Golden Gators |
| 2006-04-29 19:20:00 | Minneapolis Bricklayers | 2nd round pick in season 14 | Acquired via trade | | San Francisco Golden Gators |
| 2006-04-29 14:53:24 | Milwaukee Sundancers | Antonio Chambers | Add/Drop | Jason Meller | |
| 2006-04-29 14:48:30 | Milwaukee Sundancers | Jason Meller | Add/Drop | James Rodriquez | |